PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G071300.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 364aa    MW: 39717.2 Da    PI: 4.7605
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G071300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.62.2e-15199235135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Prupe.8G071300.3.p 199 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 235
                         *****99999************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009799.2E-86297IPR010399Tify domain
PROSITE profilePS5132012.8776297IPR010399Tify domain
PfamPF062005.8E-106596IPR010399Tify domain
PROSITE profilePS5101712.789130172IPR010402CCT domain
PfamPF062031.9E-14130171IPR010402CCT domain
SMARTSM004011.8E-12193246IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-14197240IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.43E-11197249No hitNo description
CDDcd002022.58E-14198241No hitNo description
PROSITE patternPS003440199226IPR000679Zinc finger, GATA-type
PfamPF003202.2E-13199235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEMVNAQLLQ ARAYEGEDQL VHVPAELEGD SDEGGGAKAA MNGGDQTRRS SGVTMSRCNS  60
ALPSRTSELT IAFEGEVHVF PAVTPDKVQA VLLLLGGRDI SSSFPSSESL LESNSGGIGD  120
ISRNSKLSRR TASLVRFREK RKERCFEKKI RYTCRKEVAQ RMYRKNGQFA SLKDDSKIAS  180
GNCDSSDGTS CPESVLRRCQ HCGISEKSTP AMRRGPAGPR SLCNACGLMW ANKGTLRDLT  240
KAGRPIHFDQ TELETAADFK PLMLKPENAH LDPDEEGSPE ESKPIALDTE NPPLRLGDED  300
MLETAEAATT NHISIQMENS TVNFDEQENL DEFCNASGTE FEIPANFDEQ VSIFSSLTSH  360
MAD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237241.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ5Z4U51e-59GAT20_ORYSJ; GATA transcription factor 20
TrEMBLM5VYD70.0M5VYD7_PRUPE; Uncharacterized protein
STRINGGLYMA07G30140.11e-135(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-48ZIM-like 1